bioRxiv
  1. F. Xu*, D. Ma*, K. P. MacPherson, S. Liu, B. Ye, Y. Wang, C. Bi, T. Kwok, P. Yin, S. Calve, G. E. Landreth, F. Huang, "Three dimensional nanoscopy of whole cells and tissues with in situ point spread function retrieval" (2019) bioRxiv, doi: https://doi.org/10.1101/727354, *Equal contribution
  2. ​S. Liu and F. Huang, "Enhanced 4Pi single-molecule localization microscopy with coherent pupil based localization and light sheet illumination" (2019) bioRxiv, doi: https://doi.org/10.1101/586404​

Publications
  1. H. P. Babcock, F. Huang, C. M. Speer, "Correcting Artifacts in Single Molecule Localization Microscopy Analysis Arising from Pixel Quantum Efficiency Differences in sCMOS Cameras" (2019) Scientific Reports Vol.9 18058
  2. Y. Ren, Y. He, S. Brown, E. Zbornik, M. J. Mlodzianoski, D. Ma, F. Huang, S. Mattoo, and D. M. Suter, "A single tyrosine phosphorylation site in cortactin is important for filopodia formation in neuronal growth cones" (2019) Molecular Biology of the Cell, Vol. 30, 15, pages 1817-33, Cover story
  3. ​P. Zhang*, S. Liu*, A. Chaurasia, D. Ma, M. J. Mlodzianoski, E. Culurciello and F. Huang, "Analyzing complex single molecule emission patterns with deep learning"(2018) Nature Methods, Vol.15, 11, pages 913–916, *These authors contributed equally
  4. M. J. Mlodzianoski, P. J. Cheng-Hathaway, S. M. Bemiller, T. J. McCray, S. Liu, D. A. Miller, B. T. Lamb, G. E. Landreth, F. Huang, "Active PSF shaping and adaptive optics enable volumetric localization microscopy through brain sections" (2018) Nature Methods, Vol 15, 8, pages 583-586​
  5. Y. Ren, M. J. Mlodzianoski, A. C. Lee, F. Huang, and D. M. Suter, "A low-cost microwell device for high-resolution imaging of neurite outgrowth in 3D" (2018) J. Neural. Eng. 15:035001
  6. ​​S. Liu, M. J. Mlodzianoski, Z. Hu, Y. Ren, K. McElmurry, D. M. Suter, F. Huang, "sCMOS noise-correction algorithm for microscopy images" (2017) Nature Methods, Vol. 14, 8, 760 - 761.
  7. F. Huang*, G. Sirinakis*, E. S. Allgeyer, L. K. Schroeder, W. C. Duim, E. B. Kromann, T. Phan, F. E. Rivera-Molina, J. R. Myers, I. Irnov, M. Lessard, Y. Zhang, M. A. Handel, C. Jacobs-Wagner, C. P. Lusk, J. E. Rothman, D. Toomre, M. J. Booth, J. Bewersdorf, "Ultra-High Resolution 3D Imaging of Whole Cells" (2016) Cell, Vol. 166, 4, 1028 - 1040. *Equal contribution, Cover story
  8. C. Laplante, F. Huang, I. R. Tebbs, J. Bewersdorf, T. D. Pollard, "Molecular organization of cytokinesis nodes and contractile rings by super-resolution fluorescence microscopy of live fission yeast" (2016) PNAS, 113(40):E5876-E5885.
  9. F. del Viso*, F. Huang*, J. Myers, M. Chalfant, Y. Zhang, N. Reza, J. Bewersdorf, C. P. Lusk, M. K. Khokha "Congenital Heart Disease Genetics Uncovers Context-Dependent Organization and Function of Nucleoporins at Cilia" (2016) Developmental Cell, 38(5):478-92. *Equal contribution, Cover story
  10. C. Laplante, F. Huang, J. Bewersdorf, T. D. Pollard "High speed super resolution imaging of live fission yeast cells"​  (2015) Methods in Molecular Biology, Vol. 1390, pp. 45-57
  11. D. Burke, B. Patton, F. Huang, J. Bewersdorf, and M. Booth, "Adaptive optics correction of specimen-induced aberrations in single-molecule switching microscopy," (2015) Optica 2, 177-185 
  12. Y. Lin, J. J. Long, F. Huang, W. C. Duim, S. Kirschbaum, Y. Zhang, L. K. Schroeder, A. A. Rebane, M. G. M. Velasco, A. Virruet, D. W. Moonan, J. Jiao, S. Y. Hernandez, Y. Zhang, J. Bewersdorf, ‘Quantification and optimization of image quality in high speed single-molecule switching nanoscopy’, ​(2015) PLoS ONE 10(5): e0128135. 
  13. P. D. Uchil, T. Pawliczek, T. D. Reynolds, S. Ding, A. Hinz, J. Munro, F. Huang, R. W. Floyd, H. Yang, W. Hamilton, J. Bewersdorf, Y. Xiong, D.   A. Calderwood, W. Mothes, ‘TRIM15 is a focal adhesion protein that regulates focal adhesion disassembly’, (2014) Journal of Cell Science, doi:10.1242/jcs.143537, 
  14. H. C. Lim, I. V. Surovtsev, B. G. Beltran, F. Huang, J. Bewersdorf, C. Jacobs Wagner, ‘Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation’, (2014) eLife, 3. e02758 
  15. F. Huang, T. M. P. Hartwich, F. E. Rivera-Molina, Y. Lin, W. C. Duim, J. J. Long, P. D. Uchil, J. R. Myers, M. A. Baird, W. Mothes, M. W. Davidson, D. Toomre, J. Bewersdorf, ‘Video-Rate Nanoscopy Using sCMOS Camera-Specific Single-Molecule Localization Algorithms’, (2013) Nature Methods, 10, 653–658 
  16. Q. Yan, S. L. Schwartz, S. Maji, F. Huang, C. Szent-Gyorgyi, D. S. Lidke, K. A. Lidke, M. P. Bruchez, ‘Localization Microscopy using Noncovalent Fluorogen Activation by Genetically Encoded Fluorogen-Activating Proteins’,  (2013) ChemPhysChem, 15, 687 – 695
  17. F. Huang, S. L. Schwartz, J. M. Byars, K. A. Lidke, ‘Simultaneous multiple emitter fitting for single molecule super-resolution imaging’, (2011) Biomedical Optics Express, 2, 1377-1393 
  18. D. S. Lidke, F. Huang, J. N. Post, B. Rieger, J. Wilsbacher, J. L. Thomas, J. Pouysségur, T. M. Jovin, P. Lenormand, ‘ERK nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation’, (2010) Journal of Biological Chemistry, 285, 3092-3102   
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